I double checked every one of the changes by going to the ship from the port, and looking at where it was pointing from the deck of the ship. They are all pointing in the general direction of open water. I intentionally did not try to point the ships exactly, although some of them ended up that way. I believe none of the changes point more than a couple of degrees into land, and they're all better than they were before. Most will point into water.
I do not use the world map. I have no way to fix any situations where the world map does not match the 3D map. Whether it's Isla Mona or a world map island's port not matching the 3D port, it's out of my hands. I can only fix the things I can access.
If you feel the mismatch between the world map and 3D map ports is a problem, do what I did: sail to each of the ports and adjust the numbers until they work for both maps, first with estimates then trial and error. It's easier to adjust the numbers using the console version, as that does not require a new game and can be done on the fly, without even exiting the game.
I accidentally ended up at the Turks llighthouse. That one needs to be turned 180 degrees as well.
Hook
I do not use the world map. I have no way to fix any situations where the world map does not match the 3D map. Whether it's Isla Mona or a world map island's port not matching the 3D port, it's out of my hands. I can only fix the things I can access.
If you feel the mismatch between the world map and 3D map ports is a problem, do what I did: sail to each of the ports and adjust the numbers until they work for both maps, first with estimates then trial and error. It's easier to adjust the numbers using the console version, as that does not require a new game and can be done on the fly, without even exiting the game.
I accidentally ended up at the Turks llighthouse. That one needs to be turned 180 degrees as well.
Hook